PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693049.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 264aa    MW: 29383.5 Da    PI: 9.2861
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.4e-18110164256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_020693049.1 110 RKKLRLSKEQSALLEEKFREHSTLNPKQKLTLAKQLNLRPRQVEVWFQNRRARTK 164
                     677889***********************************************98 PP
2HD-ZIP_I/II116.12e-37110197188
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     +kk+rlskeq++lLEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r ++al+een +L++e +e +
  XP_020693049.1 110 RKKLRLSKEQSALLEEKFREHSTLNPKQKLTLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLRRYCEALTEENIKLKRELQEQK 197
                     69*********************************************************************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MNQAVEDSYN ASLVLQLACG AGSTGVVSTG HRRCRRRDFS KKSEPSIQIP MLSGPSLTLG  60
ISDSVYSQSF AEASLSTSFL NVKKEAEARS EETEKFSPRG SDEEDEGSCR KKLRLSKEQS  120
ALLEEKFREH STLNPKQKLT LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEFLRRYCE  180
ALTEENIKLK RELQEQKALN LTSAAVAPMY MKLPAVTYTI CPSCERVTGP GGDGTKTISF  240
TAAATAMVAK KTLFLNPFSH SATC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-61HD-ZIP family protein