PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693057.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 628aa MW: 69816.3 Da PI: 6.6303

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693057.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.4	2.3e-15	280	339	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_020693057.1 280 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDLEEKAARAYDLAALKYWG 339 78*****************988886678446***********************97 PP
2	AP2	52.7	1.1e-16	382	433	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I +s +k +lg+fgt eeAa+a++ a+ k++g XP_020693057.1 382 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 433 57**************999754...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MKSMNNTNWL GFSLSPQLGM EVAQDPLKQT NLQATHQSSP ANASSFVPSN FLLSYPHFSS 60 SGICYGADGE NVGFYSQLSS VMPVKSDGSL CIMEAFSRSQ EGMVPSPSPK LEDFLGCGPN 120 MGTHPFSNSD RGAMALSLDS MYYGQNIEHE SNENHSLELF QQPFRHQNYF QPLHEMYQGS 180 LVGDQMSDCR FQSNEGVSDE REMGFSSLGL LRHGDLKPLS LSMSPGSQSS CITAPQQQIT 240 SASENEQLAL EHSKKRANGK GAEKQPVHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD 300 NSCKKEGQTR KGRQVYLGGY DLEEKAARAY DLAALKYWGL ATHINFSLED YQEELVQMKN 360 MSRQEYVAHL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVSGNKDLY LGTFGTQEEA 420 AEAYDIAAIK FRGTNAVTNF IMSRYDVDKI MASSTLLSGE LARRNGVIEI IDNVALTDQH 480 NSRELDSTED NTSASDWRMT LYQSPQQAPA NSEPLDHQSI SANGNHQNSS FLANFHGFFG 540 MESWSSEEQG MENNPNRMNT VSLATGDSSS SRERSTSYGV LPMASMPPLS TKFVGPTTQL 600 ISWGPTSNQL RSSVPMAQTP VYAAWNDA

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MKSMNNTNWL GFSLSPQLGM EVAQDPLKQT NLQATHQSSP ANASSFVPSN FLLSYPHFSS  60
SGICYGADGE NVGFYSQLSS VMPVKSDGSL CIMEAFSRSQ EGMVPSPSPK LEDFLGCGPN  120
MGTHPFSNSD RGAMALSLDS MYYGQNIEHE SNENHSLELF QQPFRHQNYF QPLHEMYQGS  180
LVGDQMSDCR FQSNEGVSDE REMGFSSLGL LRHGDLKPLS LSMSPGSQSS CITAPQQQIT  240
SASENEQLAL EHSKKRANGK GAEKQPVHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD  300
NSCKKEGQTR KGRQVYLGGY DLEEKAARAY DLAALKYWGL ATHINFSLED YQEELVQMKN  360
MSRQEYVAHL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVSGNKDLY LGTFGTQEEA  420
AEAYDIAAIK FRGTNAVTNF IMSRYDVDKI MASSTLLSGE LARRNGVIEI IDNVALTDQH  480
NSRELDSTED NTSASDWRMT LYQSPQQAPA NSEPLDHQSI SANGNHQNSS FLANFHGFFG  540
MESWSSEEQG MENNPNRMNT VSLATGDSSS SRERSTSYGV LPMASMPPLS TKFVGPTTQL  600
ISWGPTSNQL RSSVPMAQTP VYAAWNDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-124	AP2 family protein