PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693119.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 241aa MW: 27951.7 Da PI: 6.7894

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693119.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.3e-18	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv++v ++G ++W+ Ia+ g++Rt+k+c++rw +yl XP_020693119.2 10 KGPWTEQEDLQLVCYVSLFGHRRWDFIAKISGLKRTGKSCRLRWVNYL 57 79********************************************97 PP
2	Myb_DNA-binding	54.1	3.7e-17	64	108	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+T+eE+ l+++++ ++G++ W+ Ia +++ gRt++++k++w++++ XP_020693119.2 64 GRMTPEEEHLILELHSKWGNK-WSQIAGRLP-GRTDNEIKNYWRTHM 108 89*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MVGMEQGTRK GPWTEQEDLQ LVCYVSLFGH RRWDFIAKIS GLKRTGKSCR LRWVNYLHPG 60 LKHGRMTPEE EHLILELHSK WGNKWSQIAG RLPGRTDNEI KNYWRTHMRK MAQERKKNLL 120 SSSSSSSSSA SLSIETSTDR MENQEEVSFL LTMVEEKEQE VEVKVKGYPM DQLWNEIVNS 180 DSNTGLSFKQ YKAMEFSPLW EYCVESVWKV DDNDQPNIIP CVSDLLVSNF QNGIVLESTN 240 K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.1	4e-67	MYB family protein