PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693166.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 235aa MW: 27563.7 Da PI: 6.8493

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.2	2.2e-19	4	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W +eEde+l+++v++lG+++W+tIa+++ gR++k+c++rw++ XP_020693166.1 4 RGHWRPEEDEKLKELVARLGPHNWNTIAEMLH-GRSGKSCRLRWYNQ 49 899***************************.**********96 PP
2	Myb_DNA-binding	51.1	3.1e-16	56	99	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ ++ +G++ W+ Iar ++ gRt++ +k++w+ XP_020693166.1 56 RCPFSEEEEERLLVSHRIHGNR-WSIIARLFP-GRTDNAVKNHWHV 99 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MCTRGHWRPE EDEKLKELVA RLGPHNWNTI AEMLHGRSGK SCRLRWYNQL DPRINRCPFS 60 EEEEERLLVS HRIHGNRWSI IARLFPGRTD NAVKNHWHVI MARRSRERSK LQPKQPCISQ 120 ESHLIRKEKE KIMNFEFSKG LLFSSLIGGG NSGTLYGYKQ PISQSREEYN CWPNFHEEGE 180 TSRESSIEFY DFLQVNSDSN ETGECSRREE EQDQHEKEQQ SEAGVPFIDF LAVGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	5e-74	MYB family protein