PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693170.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 334aa MW: 36714 Da PI: 7.2355

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.0004	216	254	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_020693170.1 216 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 254 6678889999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MNRSGVYQGS LLQQMVGGST SWWNMSNMRP TNGEISHILH PHPLSSSSAL QQHLQPSNSL 60 SLNSLYESQE LPQSWSQLLL GGLVGEEERY SLDTPFKKAL NWEEQLMHQT QGAYTVDVKQ 120 ENSESLYSHG STSEEIQAAT GSKASWSQIL PVSSPRSCVT SSLSCNMLDF SNNKTERRNL 180 PPDHSSECNS IETGAALKKA RIQGSSQSQS STFKVRKEKL GDRITALHQL VSPFGKTDTA 240 SVLLEAIGYI RFLQSQIEAL SSPYLNTVSA KTRLPLLNDN CMKKRGPSDQ NGNDETKKDL 300 RSRGLCLVPV SCTLHVGSDD GADYWSPSLG GCFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	6e-70	bHLH family protein