PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693325.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HB-other

Protein Properties

Length: 350aa MW: 39951.6 Da PI: 9.1449

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.1	2.6e-07	18	75	11	56
HHHHHHHHHH..HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 11 qleeLeelFe..knrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 ++ e+e++ + kn p +e++ LA+k ++ +qV +WFqNrR+ ++ XP_020693325.1 18 EVIEMEACLKglKNAIPAREMICALAEKFsalplragktVVQPKQVWNWFQNRRYSQR 75 5566666666334788899999999999888899998889***************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MGRHPHSGGP VFRFMHNEVI EMEACLKGLK NAIPAREMIC ALAEKFSALP LRAGKTVVQP 60 KQVWNWFQNR RYSQRAKVKA PVNQNVPPPI TRDDSVHFRN VGQPASISQN IPQGQNSVEN 120 SQLEFEAKSA RDGAWYDVSA FLSHRKSETE DPEVRVRFSG FGIEEDEWIN VRRCVRQRSL 180 PCENMECIAV LPGDLILCFQ EGKEQALYFD AHILDAQRRR HDVRGCRCRF LVRYDHDQSE 240 EIVPLRKVCR RPETDYRLQK LHALRTSGSA DERALFKAGS SRDQNLIPQR IRKQNKLIEV 300 NTAEITTIAL PALARIKDNS KTSQNDRVNV SVLMPGNFGK VPEAMDVVEL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MGRHPHSGGP VFRFMHNEVI EMEACLKGLK NAIPAREMIC ALAEKFSALP LRAGKTVVQP  60
KQVWNWFQNR RYSQRAKVKA PVNQNVPPPI TRDDSVHFRN VGQPASISQN IPQGQNSVEN  120
SQLEFEAKSA RDGAWYDVSA FLSHRKSETE DPEVRVRFSG FGIEEDEWIN VRRCVRQRSL  180
PCENMECIAV LPGDLILCFQ EGKEQALYFD AHILDAQRRR HDVRGCRCRF LVRYDHDQSE  240
EIVPLRKVCR RPETDYRLQK LHALRTSGSA DERALFKAGS SRDQNLIPQR IRKQNKLIEV  300
NTAEITTIAL PALARIKDNS KTSQNDRVNV SVLMPGNFGK VPEAMDVVEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-108	HB-other family protein