PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693534.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24015.2 Da PI: 6.8012

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693534.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.2e-19	49	102	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le F k+r++ ++++LA +lgL+ +qV vWFqNrRa++k XP_020693534.1 49 KKRRLSDDQVRFLEMNFGKERKLESGRKAHLAIELGLDPKQVAVWFQNRRARWK 102 56689************************************************9 PP
2	HD-ZIP_I/II	120.1	1.1e-38	49	139	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls++qv++LE++F +e+kLe+ rK++la eLgl+p+qvavWFqnrRAR+k+kqlE +y +L++++d++ e++rLe+ev L+++l XP_020693534.1 49 KKRRLSDDQVRFLEMNFGKERKLESGRKAHLAIELGLDPKQVAVWFQNRRARWKSKQLEDEYVRLRSSHDSVLIEKCRLENEVLMLKDKLV 139 9**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MEEEKSLISS MVSSELYSQM AQGEPKARRR RKKAKIVGDE EMDIVCEGKK RRLSDDQVRF 60 LEMNFGKERK LESGRKAHLA IELGLDPKQV AVWFQNRRAR WKSKQLEDEY VRLRSSHDSV 120 LIEKCRLENE VLMLKDKLVQ SEEEIKRLTS GGGGGGGVGG GTGEVAVAGS PSSSMTTATH 180 LGEFGMDEGD GMYAAAAYGD SYYYKYMMEL GYLY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	52	RRRRKKAKIVGDEEMDIVCEGKKRR
2	29	53	RRRRKKAKIVGDEEMDIVCEGKKRR
3	30	54	RRRRKKAKIVGDEEMDIVCEGKKRR
4	31	55	RRRRKKAKIVGDEEMDIVCEGKKRR
5	97	105	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-43	HD-ZIP family protein