PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693542.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 469aa MW: 49800.2 Da PI: 8.9683

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_020693542.1 60 FVCEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP
2	zf-C2H2	12.2	0.00055	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_020693542.1 136 WKCDKCSKKYAVQSDWKAHNKTC 158 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MVELEISTAM AASNSVSADV SVSSAQVPPV KKKRNLPGMP DPNAEVIALS PKSLLATNRF 60 VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTGKEVKKRV YVCPEPSCVH HDPSRALGDL 120 TGIKKHFCRK HGEKNWKCDK CSKKYAVQSD WKAHNKTCGT REYRCDCGTL FSRRDSFITH 180 RAFCEALAEN SRPPPASSRV EEVHTASPLP ALPIQQIPPA PPEQQDPENA SKVLHCPPPP 240 APVPAPALSS NSSTTTTSGG SSNSSPAATS TSTSLFASLF PSSAPPATAA QTTTSFPTLL 300 ASDASVMEPP LLCLSSFFPL APERRQSQPS PHISATALLQ KAAQMGSSSS SSSFLRSLGL 360 ATSSTNNTGS DLSGGGSLHW SKQQQQQHAP SGLGLGLAYD SSGIATANLP ELMMSSSSLF 420 VPKPAALDFL SLGMSTPFMN SMGGGVGSSP PEKTWEAAAD QKPNGSTFL

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MVELEISTAM AASNSVSADV SVSSAQVPPV KKKRNLPGMP DPNAEVIALS PKSLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTGKEVKKRV YVCPEPSCVH HDPSRALGDL  120
TGIKKHFCRK HGEKNWKCDK CSKKYAVQSD WKAHNKTCGT REYRCDCGTL FSRRDSFITH  180
RAFCEALAEN SRPPPASSRV EEVHTASPLP ALPIQQIPPA PPEQQDPENA SKVLHCPPPP  240
APVPAPALSS NSSTTTTSGG SSNSSPAATS TSTSLFASLF PSSAPPATAA QTTTSFPTLL  300
ASDASVMEPP LLCLSSFFPL APERRQSQPS PHISATALLQ KAAQMGSSSS SSSFLRSLGL  360
ATSSTNNTGS DLSGGGSLHW SKQQQQQHAP SGLGLGLAYD SSGIATANLP ELMMSSSSLF  420
VPKPAALDFL SLGMSTPFMN SMGGGVGSSP PEKTWEAAAD QKPNGSTFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-111	C2H2 family protein