PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693702.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family YABBY
Protein Properties Length: 164aa    MW: 18419 Da    PI: 8.308
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY206.78.3e-6491606170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                      +eqvCyv+CnfCnt+lav++Ps  +f++vtvrCGhC++llsv++   +++ + ++h      ++++  +k+ + +++s  ++e s +++v  ++
  XP_020693702.1   9 LPEQVCYVHCNFCNTVLAVNIPSDNMFNIVTVRCGHCANLLSVDMGGVVETETLQNH------QKIQYGMKSLDLHVHSGPVSECSRTSTV--NT 95 
                     69***********************************************99999998......4566666666666655555443333333..34 PP

           YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     ++  +++ +      +rPPekrqrvPsayn+fikeeiqrikasnPdishreafsaaaknWahfP+i  gl
  XP_020693702.1  96 VDVGQQRLLH-----NRPPEKRQRVPSAYNKFIKEEIQRIKASNPDISHREAFSAAAKNWAHFPHIQCGL 160
                     5555555444.....9**************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MSTEVTHLLP EQVCYVHCNF CNTVLAVNIP SDNMFNIVTV RCGHCANLLS VDMGGVVETE  60
TLQNHQKIQY GMKSLDLHVH SGPVSECSRT STVNTVDVGQ QRLLHNRPPE KRQRVPSAYN  120
KFIKEEIQRI KASNPDISHR EAFSAAAKNW AHFPHIQCGL NKSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.18e-62YABBY family protein