PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693799.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 301aa    MW: 32898.8 Da    PI: 9.931
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.2e-1394138347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG g+W+ I+r +  +Rt+ q+ s+ qky
   XP_020693799.1  94 PWTEEEHRTFLAGLEKLGRGDWRGISRNFVITRTPTQVASHAQKY 138
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MEEEKGLKLF GVRIVDGERW KGEQEMETRD LKREAMEQTM TKGMLKSKSM MNLGACGSNS  60
SGYHGAGDDG FLSDGGLSKS SRRREGQERK RGVPWTEEEH RTFLAGLEKL GRGDWRGISR  120
NFVITRTPTQ VASHAQKYFL RQSNPNKKKR RSSLFDVVIS NNAKNPQTTP IPPLPSKKSD  180
GTFEDADHLS QNHHSSGSPS FTIFQTVSLG AENCSSSSPN LHKTIPTDVG HPTFTFISTI  240
VTQDQPQPAS LLKLSASSAT PQTLVNPATT STATNDLELS IAPPQSQSNL STLSPGTIRV  300
V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147151KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-36MYB_related family protein