PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693821.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25398.2 Da    PI: 8.4795
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.4e-201763147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k+ien+  rqv fs+Rr+ ++KKA ELS+LC+ae+ +++fs+ gk +
  XP_020693821.1 17 KSIENEEARQVCFSNRRAAVFKKATELSILCGAEIGIVVFSPAGKPF 63
                    79*****************************************9855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MARKKRHSIG RQKIAIKSIE NEEARQVCFS NRRAAVFKKA TELSILCGAE IGIVVFSPAG  60
KPFSFGHPSL DYITKRFLGG GCSGSGGEVV GPLCGMFVEG QKLLQLNQEH AGLTEKLEEA  120
RRMRAKLEAG VAAQRGRSGL SCDVEVHEMC VEDLESFQKR LEELRRGVTN RREELEILCI  180
DTKVARGGVP PQLGYGGWYL GGYNGLYLTP APVGWFYGHD QDMNMGFSVW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-28M-type_MADS family protein