PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693924.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LFY
Protein Properties Length: 454aa    MW: 50073.2 Da    PI: 6.7533
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY608.61.2e-18514211385
         FLO_LFY   1 mdp.eafsaslfkwdpraaaaapp...........arlleeaavseap......leaaaaaaark.lreleelfkayGvryltvakiaelGftvs 76 
                     mdp +afsaslf+wdpraaaaapp             l+ +++    +      ++a+aa aar+ +relee+f++yGvry+tva+i++lGft+s
  XP_020693924.1   1 MDPsDAFSASLFRWDPRAAAAAPPaaaqscpavisMALQAHHQ----AqdgpptASATAAEAARAaARELEEVFEGYGVRYATVARIGDLGFTAS 91 
                     676256**********999966665666665554322222222....123334433333333443588*************************** PP

         FLO_LFY  77 tLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrlee...eeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggegl 168
                     tLv+m++ee+dd+m++ls++fr+dllvGeryGikaa+raerrr+e+    ++ ++r  lls d+++aldalsqeglseepvq  +e+agsgge +
  XP_020693924.1  92 TLVGMREEEVDDMMATLSHLFRWDLLVGERYGIKAAIRAERRRIEDhllPDDPRRRLLLLSPDQHNALDALSQEGLSEEPVQLDRETAGSGGEAA 186
                     **********************************************88645566666677******************************99987 PP

         FLO_LFY 169 geaelvaaee.kksee.ekkkaskkkqkrkkkkelkse................ededeeeeededeegsgedgeerqrehPfivtepgevargk 245
                     g+++  + ++ ++++  +kk+ s+ k+k+kkkk ++ e                +d+d+ +++ e++e++++ + erqrehPfivtepgevar+k
  XP_020693924.1 187 GRSRDGKGKNpQRRNMgKKKDGSSMKNKKKKKKCMEDEdeeeeevemwrraaigDDNDDGNDDGEESESERSFAGERQREHPFIVTEPGEVARAK 281
                     776655554423333303333334455555555444447789999999999986555555555555566666778******************** PP

         FLO_LFY 246 knGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqac 340
                     knGLDYLf+LyeqC+efLlqvq++akerG+kcPtkvtn vfryakk+gasyinkPkmrhYvhCYalh+LdeeasnalrrafkergenvGawr ac
  XP_020693924.1 282 KNGLDYLFHLYEQCHEFLLQVQALAKERGDKCPTKVTNLVFRYAKKVGASYINKPKMRHYVHCYALHVLDEEASNALRRAFKERGENVGAWRLAC 376
                     *********************************************************************************************** PP

         FLO_LFY 341 ykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385
                     ykplvai+a +++didavfnahprLsiWYvPtkLrqLChl+rs++
  XP_020693924.1 377 YKPLVAISAAHAFDIDAVFNAHPRLSIWYVPTKLRQLCHLARSSS 421
                     ******************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    
MDPSDAFSAS LFRWDPRAAA AAPPAAAQSC PAVISMALQA HHQAQDGPPT ASATAAEAAR  60
AAARELEEVF EGYGVRYATV ARIGDLGFTA STLVGMREEE VDDMMATLSH LFRWDLLVGE  120
RYGIKAAIRA ERRRIEDHLL PDDPRRRLLL LSPDQHNALD ALSQEGLSEE PVQLDRETAG  180
SGGEAAGRSR DGKGKNPQRR NMGKKKDGSS MKNKKKKKKC MEDEDEEEEE VEMWRRAAIG  240
DDNDDGNDDG EESESERSFA GERQREHPFI VTEPGEVARA KKNGLDYLFH LYEQCHEFLL  300
QVQALAKERG DKCPTKVTNL VFRYAKKVGA SYINKPKMRH YVHCYALHVL DEEASNALRR  360
AFKERGENVG AWRLACYKPL VAISAAHAFD IDAVFNAHPR LSIWYVPTKL RQLCHLARSS  420
SQPSAAAAVA AGSSSSAALR PVGGSESGLR PSMF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204219KKKDGSSMKNKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.12e-99LFY family protein