PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020694091.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 500aa MW: 54926.8 Da PI: 6.4034

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020694091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.4	4.5e-17	199	248	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr llP++ ++K +Ka+ L +++eYI+ Lq XP_020694091.1 199 RSKHSATEQRRRSKINDRFQILRGLLPNS----DQKRDKASFLLEVIEYIQFLQ 248 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MLMELPGKKK TRDLLSLYTK ESSFQLQDSR PHAQGFLMKT HDFLQPLETA DDEKTHKGPT 60 QRTTHVLPGG IGTYSISHVS SGASSFAVVK PESNTCGPDA AYAFPVWDAA KEPRPTTGQW 120 PSTFAALSPP SFGSLASSRN SEFPDKKQRF MESASRFSKG FEEDDDDDEE FGKRESSSHK 180 DLTVKIDGKT GEQKACTPRS KHSATEQRRR SKINDRFQIL RGLLPNSDQK RDKASFLLEV 240 IEYIQFLQER LQKYESMYPG WSDETAKLMP WNNHHGSGDG MIDPQVLKNG ASSGLLMSDS 300 SIPVAPSILS SSQNPTESDL IAGVSYKELE NPNGFSNKVA ASPASLQPNL YPSIGRGTGD 360 VSHPQQRLIP ETVFTGSQSE WLRSSFPTGC NVSNDEINAQ ELTIDEGTIS VSSEYSQGLL 420 NTLSQALQNS GIDLSQASIS VHINLGRRAS VSRRNASSMA APKEQDEPLS SNLVMNSTRS 480 GNRSDESEQA TKKHKLDHHN

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MLMELPGKKK TRDLLSLYTK ESSFQLQDSR PHAQGFLMKT HDFLQPLETA DDEKTHKGPT  60
QRTTHVLPGG IGTYSISHVS SGASSFAVVK PESNTCGPDA AYAFPVWDAA KEPRPTTGQW  120
PSTFAALSPP SFGSLASSRN SEFPDKKQRF MESASRFSKG FEEDDDDDEE FGKRESSSHK  180
DLTVKIDGKT GEQKACTPRS KHSATEQRRR SKINDRFQIL RGLLPNSDQK RDKASFLLEV  240
IEYIQFLQER LQKYESMYPG WSDETAKLMP WNNHHGSGDG MIDPQVLKNG ASSGLLMSDS  300
SIPVAPSILS SSQNPTESDL IAGVSYKELE NPNGFSNKVA ASPASLQPNL YPSIGRGTGD  360
VSHPQQRLIP ETVFTGSQSE WLRSSFPTGC NVSNDEINAQ ELTIDEGTIS VSSEYSQGLL  420
NTLSQALQNS GIDLSQASIS VHINLGRRAS VSRRNASSMA APKEQDEPLS SNLVMNSTRS  480
GNRSDESEQA TKKHKLDHHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.6	4e-58	bHLH family protein