PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020694879.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19489 Da    PI: 4.4199
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020694879.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.8e-162381147
                    HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    v fskRr+g++KKAeELS+L +a++ ++ fs+ gkly
  XP_020694879.2  2 VCFSKRRKGLFKKAEELSILSGAKIGILTFSQAGKLY 38
                    89**********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MVCFSKRRKG LFKKAEELSI LSGAKIGILT FSQAGKLYCS DAEILNSLLC SQVGIPQDKE  60
IEDDWESAFA EDMEAEAHFC SQFDSYPEKE LYCSNTIADS LLRREFEISP EKEAGNHWEF  120
DFAEAMAGKN LPFWFNRVDA QIMSYEELQR FERAILEYAQ MQQAKTSYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.13e-11M-type_MADS family protein