PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020694909.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 376aa    MW: 39716.8 Da    PI: 6.7195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020694909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.3e-12307352655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+e++P+     +k  s a++L +Av++Ik Lq
  XP_020694909.1 307 SIAERERRTRISEKLRKLQEIVPNM----DKQTSTADMLDLAVQHIKGLQ 352
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MSQSHSTAGG VSPPMNAAVH RAAGQQGLTR YGSAPGSLLA RAADSVIAGA GDGGFRTTIG  60
SDGQMSRFFP RDSPCLASNS RFQAAASVGV ASDEVEIQRS GGGGSSASVG LQQPFDLGVD  120
SPVRDMASAA AVAGEARAGG SHLTRQHSSP AGFFSHLMVD SGFAASRGTR SYFQPANEST  180
NALTGRRLKS QLSFSRQDAV SQISEISIPE MGESSDEAGG NAGQSYVPSN YPISSWDETN  240
SIVFSTSNKH SRDNGDIISS LNNIDSQYGL PGTSVDMSVV DKLLQIQQDS APFKIRAKRG  300
CATHPRSIAE RERRTRISEK LRKLQEIVPN MDKQTSTADM LDLAVQHIKG LQSQIQILKQ  360
EQTSCTCVSN DEDSLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-64bHLH family protein