PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695121.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 208aa MW: 24310.7 Da PI: 7.2512

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	6e-19	77	131	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++eq Lee F+ +++++ ++eeLA+klgL rqV vWFqNrRa+ k XP_020695121.1 77 RKKLRLNPEQSSMLEESFRAHNTLTSLQKEELAQKLGLFPRQVEVWFQNRRARTK 131 778899***********************************************98 PP
2	HD-ZIP_I/II	116.6	1.5e-37	77	164	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+ eq+++LEesF+++++L++ +K+ela++Lgl prqv+vWFqnrRARtk+kq+E+d+e+L++++++l++en+rL+ e +eLr XP_020695121.1 77 RKKLRLNPEQSSMLEESFRAHNTLTSLQKEELAQKLGLFPRQVEVWFQNRRARTKLKQTEVDCEVLRTWCENLRDENRRLRMELQELR 164 69************************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
MGEEEMCDTT LGLGIGKGGY KEGKGRRCEA DPTVRLHLWF PSCPKKEIEE EVEEERKQRL 60 TKSKSEDDDD NKLHGARKKL RLNPEQSSML EESFRAHNTL TSLQKEELAQ KLGLFPRQVE 120 VWFQNRRART KLKQTEVDCE VLRTWCENLR DENRRLRMEL QELRFYTEVS KVEETRVCSS 180 CEELMSVEEK GGGFVLGKKR ARVLQLCN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	134	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-39	HD-ZIP family protein