PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020695176.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 196aa    MW: 21600.5 Da    PI: 6.0903
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020695176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.56.4e-40341331100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+lapyfp ++p kf  +h++FGasn++k l++lpe++r da+ss+vyeA++r+rdPvyG++g i  lq+q+  l+a+la
  XP_020695176.1  34 PCAACKILRRRCANQCILAPYFPPTEPLKFTTAHHVFGASNIIKSLQELPESQRADAVSSMVYEANVRIRDPVYGCAGAICYLQKQVVDLQAQLA 128
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     + +++
  XP_020695176.1 129 RCRAQ 133
                     99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MESSLYPLFS STSSSSSSPP LPQAQTPKTS YQSPCAACKI LRRRCANQCI LAPYFPPTEP  60
LKFTTAHHVF GASNIIKSLQ ELPESQRADA VSSMVYEANV RIRDPVYGCA GAICYLQKQV  120
VDLQAQLARC RAQLLAVETQ HAQILTLFYK DMDFSSLPQL PVNSPSAALN PFEGLDDFLL  180
DDNSHGTIRE ETLWAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-53LBD family protein