PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695191.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 293aa MW: 32724.6 Da PI: 5.703

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1e-17	94	147	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_020695191.1 94 KKRRLNMEQVRTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 147 456899***********************************************9 PP
2	HD-ZIP_I/II	128.1	3.8e-41	93	185	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdyeaLkr+++ ++++n++L++++++L++el++ XP_020695191.1 93 EKKRRLNMEQVRTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEALKREFEIVRSQNDALHAHNKKLQAELSA 185 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MYHNQMTYNG LPSSSPSSPP PNFFPQGFLF HSSVETESHQ LSPILPSTPC VNSQDFGGVA 60 AMLGKRTVWS EEMAVAAVAG EEELSDDCSL PGEKKRRLNM EQVRTLERNF ELGNKLEPER 120 KMQLARALGL QPRQIAIWFQ NRRARWKTKQ LEKDYEALKR EFEIVRSQND ALHAHNKKLQ 180 AELSALKGRD GAELINLNKE TEGSSSNRSE NSCDINLDIS RTAAIDGPAM NPNETGRQFF 240 PSYRPTTNVT QLPKIENAIP TAAAAGGSGN DENFCNIFCG VDEPSAFWPW TEH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	5e-86	HD-ZIP family protein