PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695270.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 240aa MW: 27313.5 Da PI: 4.6347

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695270.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.2e-21	34	87	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ eLAkklgL+ rqV vWFqNrRa++k XP_020695270.1 34 KKRRLTPEQVHLLERSFEAENKLEPEKKSELAKKLGLQPRQVAVWFQNRRARWK 87 5678*************************************************9 PP
2	HD-ZIP_I/II	133.1	1e-42	33	124	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv+lLE+sFe+e+kLepe+K+ela++LglqprqvavWFqnrRAR+ktkqlE+dye+Lk++ydal +++++L k+++ Lr+++ XP_020695270.1 33 EKKRRLTPEQVHLLERSFEAENKLEPEKKSELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYERLKASYDALLADHDTLLKDNDCLRSQVI 124 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MLSLEEGAHK RRPFFTTAEE LLEEEYYDEQ LPEKKRRLTP EQVHLLERSF EAENKLEPEK 60 KSELAKKLGL QPRQVAVWFQ NRRARWKTKQ LERDYERLKA SYDALLADHD TLLKDNDCLR 120 SQVISLTEKL REKELEVAVK ELDSDIEKTA IEGQPSPPSM EMLATLQQRG GDRLSTGSRG 180 STVVDGQGPP ALPVADSSVD SYFQESLIEG GGCTSDDGCS YLPGDIFQNA SHADNWWVWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	90	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-60	HD-ZIP family protein