PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020695652.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 252aa    MW: 28218.9 Da    PI: 4.6702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020695652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.6e-1557102555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +  +Er+RR+++N+++  Lr+++P+      +K++Ka+i++ A+eYI++Lq
  XP_020695652.1  57 NIVMERNRRKKLNDRLYALRSVVPNI-----TKMDKASIVKDAIEYIQQLQ 102
                     5679*********************7.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MDDMDADYDN YWDTKLFWDG EELNSWGGLD EPFSSYDSSS PECAISPTSS SSAAAKNIVM  60
ERNRRKKLND RLYALRSVVP NITKMDKASI VKDAIEYIQQ LQREEKQLLE EVGEMESGHR  120
EGKMSSSIND EIARENEMIS PRKKRKMSPC SPGGGQSIEA LELSVCEVGE RTLVVSISCN  180
KKRHTMMKVC EIFESLNLRI ITASFTSVSG TLLHTLFIET DEGTNGEALK EKIEMAIAEM  240
NVPRSPVSCV SL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-55bHLH family protein