PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020695738.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Whirly
Protein Properties Length: 235aa    MW: 26071 Da    PI: 9.6829
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020695738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.31.8e-56571931137
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s++k+kaal + +v ptf+++dsg+++++++G +ll++++a+++rkyd e+kq falsatev+ l++l++ esceffhdp++k+s eG+v+k+l 
  XP_020695738.1  57 SIFKGKAALLMSPVPPTFTKMDSGHQRVDKKGVVLLKFIPAIGQRKYDSERKQFFALSATEVGCLISLGPDESCEFFHDPSMKSSLEGQVKKTLT 151
                     79********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                     + Pl dG G+++nlsv n ++k+ne+f++Pv+kaef+v+r++
  XP_020695738.1 152 ISPLNDGGGYMFNLSVMNAVQKTNERFTLPVTKAEFSVMRTA 193
                     ***************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MLSRFFSLRR QAVSSNFLAE KLSYVRDASW SYNLVSERGI STAGSERSSG KAFADFSIFK  60
GKAALLMSPV PPTFTKMDSG HQRVDKKGVV LLKFIPAIGQ RKYDSERKQF FALSATEVGC  120
LISLGPDESC EFFHDPSMKS SLEGQVKKTL TISPLNDGGG YMFNLSVMNA VQKTNERFTL  180
PVTKAEFSVM RTACGFVLPL IMGWDRVIGP HLDRTGHGPP EQSAIKMDPA LEWER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-75Whirly family protein