PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696040.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 1421aa MW: 158925 Da PI: 8.687

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696040.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0015	1336	1359	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L +H ++H XP_020696040.1 1336 VCPekGCGKKFFSHKYLLQHRKVH 1359 69999*****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1421 aa Download sequence
MAPDPSLSEV LPWLKTLPLA PEYRPTLVEF QDPIAYILKI EQEASRYGIC KIVPPVPAAP 60 KTTAVANLNL SFSSRSPSGD PTFTTRQQQI GFCPRRPRPV QKSVWQSGCR YTLSQFETKA 120 RSFERAHLRK SRKKNRSSTS LCPIEVESLF WKTAADKPSS VEYANDMPGS GFAELREGEM 180 DMTAAENVGE TAWNMRGVAR AKGSLLRFMR EEIPGVTSPM VYVAMLFSWF AWHVEDHDLH 240 SLNYLHMGAG KTWYGVPRDA ALAFEEVVRI HGYGGEVNPL ITFATLAEKT TLMSPEVLIS 300 SGIPCCRLVQ NAGEFVVTFP GSYHSGFSHG FNCGEASNIA TPEWLKVAKE AAIRRASTNC 360 PPMVSHYQLL YALALSLCSR NPKIVSTPKS SRLKHKRRCV GETMIKETFV QNVIHNNSLL 420 NILLDDGSSC LILPQRTFDK PLCSGLHLKL QMKVKPRIAL GLCHAEDKME GNSVHDFYIG 480 SRSSWPSSSG FCPAEENSNS VYYRKNLLAT KISSLGSSGS QILSSRLQNK EGQNNKYRTD 540 GVLDQGLLSC VTCGILSYAC VAVMQPSEAA AEYLLSSNCN SFSNQIVGFE ENCGLNNEAT 600 SNTLNSDVDV NVGHIEKIHS PVQVHFRNDG LLSNAKVERG ASALDLLAAA YGDLSDSEED 660 ALHDVSFCAD GDKLTHSSLM CIVDDQSASD KDSYRMHVFC LEHAVEVEKR LRVLGGVNMM 720 LLCHPEYPKI ESEAKLVAEE LGLDHQWKSV KYRDASEQDQ EKIRLAIEDE DVIPCNGDWA 780 VKLGINLYYS VSLSQSPLFR KQLPYNEVIY KSFFQKSPVE QISSGTISRR QKKIIFAGKW 840 CGKVWMSNQV HPFLADQNFP DDDDNIDVSL EANSYRENVN QLVLSRRNSL NSYTADRRNS 900 GKKRTKSEYL SSARKHAPAP ARLDKDCNAR YAEENSGYAG NADCDPNTDR SEAETDIEED 960 DEQAILGRRN STNNNAVARR KSDHKKYTVR SSTRKCTHTW LDKSSDARCA EENSGNADGE 1020 QDRDRSEADT DMEDDKQANG SRWNSTKNNA YARRKFYKRK KSAVISNALK HAHIKSDNFS 1080 DSRYAKENSA HAGNSACAPD ADRSQSNSDI DDDIQATIRK RHLTNSNGAP KRKSDEKRKC 1140 SVVRSRTRKA THTQLEDSSN AGCAEENTGN ARYADDDRHR DQSSEADTDS EGKKQASVPR 1200 KNLPNNNAAA RKKSGKKRKK LKDGCNRKAA QTRSGSSAKT GCAEDNFSMK CGGRFSCVSP 1260 SVKGTNQDQR SMQLRKRRLN SGEANVIVAP EKPNNRKKIK KALDSVPDKE NFSCDIEGCC 1320 MSFRTKHDLC LHKRNVCPEK GCGKKFFSHK YLLQHRKVHC DDRPLKCPWK GCKMTFKWAW 1380 ARTEHIRVHT GERPYSCREP GCDLTFRFVS DFSRHRRKTG H

Sequence ? help Back to Top

Protein Sequence Length: 1421 aa Download sequence

MAPDPSLSEV LPWLKTLPLA PEYRPTLVEF QDPIAYILKI EQEASRYGIC KIVPPVPAAP  60
KTTAVANLNL SFSSRSPSGD PTFTTRQQQI GFCPRRPRPV QKSVWQSGCR YTLSQFETKA  120
RSFERAHLRK SRKKNRSSTS LCPIEVESLF WKTAADKPSS VEYANDMPGS GFAELREGEM  180
DMTAAENVGE TAWNMRGVAR AKGSLLRFMR EEIPGVTSPM VYVAMLFSWF AWHVEDHDLH  240
SLNYLHMGAG KTWYGVPRDA ALAFEEVVRI HGYGGEVNPL ITFATLAEKT TLMSPEVLIS  300
SGIPCCRLVQ NAGEFVVTFP GSYHSGFSHG FNCGEASNIA TPEWLKVAKE AAIRRASTNC  360
PPMVSHYQLL YALALSLCSR NPKIVSTPKS SRLKHKRRCV GETMIKETFV QNVIHNNSLL  420
NILLDDGSSC LILPQRTFDK PLCSGLHLKL QMKVKPRIAL GLCHAEDKME GNSVHDFYIG  480
SRSSWPSSSG FCPAEENSNS VYYRKNLLAT KISSLGSSGS QILSSRLQNK EGQNNKYRTD  540
GVLDQGLLSC VTCGILSYAC VAVMQPSEAA AEYLLSSNCN SFSNQIVGFE ENCGLNNEAT  600
SNTLNSDVDV NVGHIEKIHS PVQVHFRNDG LLSNAKVERG ASALDLLAAA YGDLSDSEED  660
ALHDVSFCAD GDKLTHSSLM CIVDDQSASD KDSYRMHVFC LEHAVEVEKR LRVLGGVNMM  720
LLCHPEYPKI ESEAKLVAEE LGLDHQWKSV KYRDASEQDQ EKIRLAIEDE DVIPCNGDWA  780
VKLGINLYYS VSLSQSPLFR KQLPYNEVIY KSFFQKSPVE QISSGTISRR QKKIIFAGKW  840
CGKVWMSNQV HPFLADQNFP DDDDNIDVSL EANSYRENVN QLVLSRRNSL NSYTADRRNS  900
GKKRTKSEYL SSARKHAPAP ARLDKDCNAR YAEENSGYAG NADCDPNTDR SEAETDIEED  960
DEQAILGRRN STNNNAVARR KSDHKKYTVR SSTRKCTHTW LDKSSDARCA EENSGNADGE  1020
QDRDRSEADT DMEDDKQANG SRWNSTKNNA YARRKFYKRK KSAVISNALK HAHIKSDNFS  1080
DSRYAKENSA HAGNSACAPD ADRSQSNSDI DDDIQATIRK RHLTNSNGAP KRKSDEKRKC  1140
SVVRSRTRKA THTQLEDSSN AGCAEENTGN ARYADDDRHR DQSSEADTDS EGKKQASVPR  1200
KNLPNNNAAA RKKSGKKRKK LKDGCNRKAA QTRSGSSAKT GCAEDNFSMK CGGRFSCVSP  1260
SVKGTNQDQR SMQLRKRRLN SGEANVIVAP EKPNNRKKIK KALDSVPDKE NFSCDIEGCC  1320
MSFRTKHDLC LHKRNVCPEK GCGKKFFSHK YLLQHRKVHC DDRPLKCPWK GCKMTFKWAW  1380
ARTEHIRVHT GERPYSCREP GCDLTFRFVS DFSRHRRKTG H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1216	1220	KKRKK
2	1216	1228	KKRKKLKDGCNRK
3	1217	1229	KKRKKLKDGCNRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein