PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696150.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 350aa MW: 35962.3 Da PI: 10.0648

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.1	4.5e-40	57	188	4	129
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.k 96 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++tieWLlqqa+pai++ tgt++++a+++ ++s +ss+s+ s++ ++++ XP_020696150.1 57 PKRSSKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSEGETIEWLLQQAEPAIIATTGTGTIPANFSsLNVSIRSSGSSLSAPPSKSAPLfA 151 6899***************************************************************9998888888888888888777777778 PP TCP 97 skksqksaasalnlakesr....akarararertrek 129 ++ + ++++s+l++++ ++ ++ r+r re+ XP_020696150.1 152 HHYEVADPSSMLAFHQPDVplvaESTDQYFRKRFREN 188 9999999999999998554444433333344455555 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MEQVDHRHSG AHPPPPPATS PLLTGSGHVD SSLAISTTKQ KTTVAVAAAA PGAVAQPKRS 60 SKDRHTKVDG RGRRIRMPAA CAARVFQLTR ELGHKSEGET IEWLLQQAEP AIIATTGTGT 120 IPANFSSLNV SIRSSGSSLS APPSKSAPLF AHHYEVADPS SMLAFHQPDV PLVAESTDQY 180 FRKRFRENLF KEEQEGPGAG AGAAASSSPP KPGSRPVVPA AMWAVAPGSS TGGGAFWMLP 240 VTAASAPMAP EAPSSLWTFP TAAGASTMQA PLQFGRAMGG MQMGSMFPAV QHLGLGIADS 300 NLGMIGAINA YNRSGRGGGG GAVMSSDHDS AMARRQGSQS GGGDGHSNSQ

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MEQVDHRHSG AHPPPPPATS PLLTGSGHVD SSLAISTTKQ KTTVAVAAAA PGAVAQPKRS  60
SKDRHTKVDG RGRRIRMPAA CAARVFQLTR ELGHKSEGET IEWLLQQAEP AIIATTGTGT  120
IPANFSSLNV SIRSSGSSLS APPSKSAPLF AHHYEVADPS SMLAFHQPDV PLVAESTDQY  180
FRKRFRENLF KEEQEGPGAG AGAAASSSPP KPGSRPVVPA AMWAVAPGSS TGGGAFWMLP  240
VTAASAPMAP EAPSSLWTFP TAAGASTMQA PLQFGRAMGG MQMGSMFPAV QHLGLGIADS  300
NLGMIGAINA YNRSGRGGGG GAVMSSDHDS AMARRQGSQS GGGDGHSNSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	5e-30	TCP family protein