PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696157.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 238aa MW: 26549 Da PI: 8.0661

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696157.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++ +G g+W++ ++ g+ R++k+c++rw +yl XP_020696157.1 14 KGAWTKEEDQRLVSYIQAHGEGCWRSLPKAAGLMRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.6	6.1e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ lG++ W++Ia +++ gRt++++k++w+++ XP_020696157.1 67 RGNFTEEEDELIIKLHGFLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MGRSPCCDKA HTNKGAWTKE EDQRLVSYIQ AHGEGCWRSL PKAAGLMRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHGFLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLFSRG 120 IDPQTHHPIT AATAAFLTSP EIFSAVPETT DTSDNKCHSD SCSGGGSPNY VDLNLDLSIS 180 LPYHSSPHPS PYFDDSSTAA AVRTPEICFC RRLGFRGGEA CVCESLKEHL VLRLAISN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-89	MYB family protein