PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696327.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 390aa MW: 44475.2 Da PI: 7.015

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.8	5.1e-27	81	162	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem++ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k++ +++ + + py+++l+ XP_020696327.1 81 WVQEETRSLISLRREMDRLFNTSKSNKHLWEQISAKMRHKGFDRSPTMCTDKWRNLLKEFKKAKHQYRSG---GTAKLPYYKELD 162 ******************************************************************97...56689***98 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MSLITLEQLL REEEEVVGKG RAAYLSDKPR PIDFYKEEGR EMMIDVASNG GLPLLQQQMI 60 LAESSGEDPE VKAPKKRAET WVQEETRSLI SLRREMDRLF NTSKSNKHLW EQISAKMRHK 120 GFDRSPTMCT DKWRNLLKEF KKAKHQYRSG GTAKLPYYKE LDELLKNRSK NAASKNHMSS 180 KVDSYSQYSE KGLDDASIPY NSVEANGRSS FNLERRLDPD GHPLAITSAD AVAAGGVPPW 240 NWRDTSANGC DNHSSYGGRV IQVKCGIYAK KIGIDGSAEA IKEAIKSAFG LRTRRAFWLE 300 DEDEVVRSLD RDMPLGTYTL HLDEGISIKL CLYEDTDRMT FRTEDKILYS KEDFREFLLR 360 HNWTGLRELS GFHTVDTLDD LRPGAMYQGV

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MSLITLEQLL REEEEVVGKG RAAYLSDKPR PIDFYKEEGR EMMIDVASNG GLPLLQQQMI  60
LAESSGEDPE VKAPKKRAET WVQEETRSLI SLRREMDRLF NTSKSNKHLW EQISAKMRHK  120
GFDRSPTMCT DKWRNLLKEF KKAKHQYRSG GTAKLPYYKE LDELLKNRSK NAASKNHMSS  180
KVDSYSQYSE KGLDDASIPY NSVEANGRSS FNLERRLDPD GHPLAITSAD AVAAGGVPPW  240
NWRDTSANGC DNHSSYGGRV IQVKCGIYAK KIGIDGSAEA IKEAIKSAFG LRTRRAFWLE  300
DEDEVVRSLD RDMPLGTYTL HLDEGISIKL CLYEDTDRMT FRTEDKILYS KEDFREFLLR  360
HNWTGLRELS GFHTVDTLDD LRPGAMYQGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-171	Trihelix family protein