PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696513.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARR-B

Protein Properties

Length: 530aa MW: 59349 Da PI: 5.6098

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696513.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	77	2.4e-24	188	239	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kpr+ Wt eLH++F++av+qL G ++A+Pk+il++m+++gL++e+v+SHLQ R XP_020696513.1 188 KPRVTWTAELHAEFINAVNQL-GLDRAVPKKILDIMNIPGLSRENVASHLQY-R 239 79*****************.***************************4.4 PP
2	Myb_DNA-binding	33.8	7.9e-11	190	237	1	45
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwq 45 r WT+e++ +++av+qlG + +k+I m+ g++++++ s++q XP_020696513.1 190 RVTWTAELHAEFINAVNQLGLDraVPKKILDIMNiPGLSRENVASHLQ 237 679********************************************9 PP
3	Response_reg	72.6	1.5e-24	19	126	1	108
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+ + ++ l+++l + gy +v+ a+++++al+ll+e++ +Dl++ D++mp+mdG++ll+ + e ++lp+i+++ + + + + + G XP_020696513.1 19 VLAVDDDAFSLKMLERLLLECGY-KVTIAQHAHDALKLLRENKdiYDLVISDVKMPDMDGFKLLEILGLE-MDLPVIMLSVDCDFKSVMKGIMHG 111 799******************.***********99999****************999654.48****************** PP ESEEEESS--HHHHH CS Response_reg 94 akdflsKpfdpeelv 108 a d+l Kp+ e++ XP_020696513.1 112 AVDYLLKPIRLEDIK 126 ********99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MDKCEDSMIA RGFPNELRVL AVDDDAFSLK MLERLLLECG YKVTIAQHAH DALKLLRENK 60 DIYDLVISDV KMPDMDGFKL LEILGLEMDL PVIMLSVDCD FKSVMKGIMH GAVDYLLKPI 120 RLEDIKVIWK HVVRKSLKEK KGSYDLWNKL DHARTSQDVP IKDFKSHGKE RDHDDSDDSD 180 DEATAQKKPR VTWTAELHAE FINAVNQLGL DRAVPKKILD IMNIPGLSRE NVASHLQYRR 240 GLKRNGMGLS EHFNTYAGTS VYAGSSDFMT LNSRCSAISF ENFGVNGCKT MLAPSTYYPA 300 QQFPSGRATM QPTWFTHPFN GQNDLNRKYA NNTKSSEVIT GPQHSINPQT DQFVTENPGL 360 IRNSLVMNAP TQAYNDLGFQ SFLRRSNQLN SYTQTCQLPL PADLNSCLSS AKQLGYAEGS 420 PKIGTLFSNI HLEGCDSDDN LSMELNTMLP SEQKQQQFSS CSGLDVEMGA INDTSLVDAY 480 SNINENLNQR SPLNFTTVSA RSSSPEIIAC LNDVAYEDDL HAALRQFSRS

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MDKCEDSMIA RGFPNELRVL AVDDDAFSLK MLERLLLECG YKVTIAQHAH DALKLLRENK  60
DIYDLVISDV KMPDMDGFKL LEILGLEMDL PVIMLSVDCD FKSVMKGIMH GAVDYLLKPI  120
RLEDIKVIWK HVVRKSLKEK KGSYDLWNKL DHARTSQDVP IKDFKSHGKE RDHDDSDDSD  180
DEATAQKKPR VTWTAELHAE FINAVNQLGL DRAVPKKILD IMNIPGLSRE NVASHLQYRR  240
GLKRNGMGLS EHFNTYAGTS VYAGSSDFMT LNSRCSAISF ENFGVNGCKT MLAPSTYYPA  300
QQFPSGRATM QPTWFTHPFN GQNDLNRKYA NNTKSSEVIT GPQHSINPQT DQFVTENPGL  360
IRNSLVMNAP TQAYNDLGFQ SFLRRSNQLN SYTQTCQLPL PADLNSCLSS AKQLGYAEGS  420
PKIGTLFSNI HLEGCDSDDN LSMELNTMLP SEQKQQQFSS CSGLDVEMGA INDTSLVDAY  480
SNINENLNQR SPLNFTTVSA RSSSPEIIAC LNDVAYEDDL HAALRQFSRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	3e-76	ARR-B family protein