PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696577.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SRS

Protein Properties

Length: 289aa MW: 30138.5 Da PI: 7.8941

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.2	9.1e-68	63	223	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk.aaasaaeaaskrkrelkskkqsalsstklssaes 96 sg+++CqdCGnqakkdC+h+RCRtCCksrgfdC+th+kstWvpaa+rrerq + +a+++ a +s++++a+k++r s++++++s+t++s++ + XP_020696577.1 63 SGSSTCQDCGNQAKKDCTHRRCRTCCKSRGFDCSTHIKSTWVPAARRRERQLTGTATAAAfAGSSTSTSAPKKPRLI-SSQTTTTSHTSTSNT-P 155 68899*******************************************877666555504455577777888765.666667777776665.6 PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++tss lP +v+++avf+cvrv+svddge+e+aYq++v+igGhvfkG+LydqG+++ XP_020696577.1 156 PRSFDTSSshqeacfrenLPGHVRAPAVFKCVRVTSVDDGEDEYAYQAVVNIGGHVFKGFLYDQGVDD 223 77888888899****************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MGMVGLRDVF VVAPAVPPSH NESMLCSGEH PIIPLLAAAP CLAQPPHNQN PNPNSSGILS 60 VASGSSTCQD CGNQAKKDCT HRRCRTCCKS RGFDCSTHIK STWVPAARRR ERQLTGTATA 120 AAFAGSSTST SAPKKPRLIS SQTTTTSHTS TSNTPPRSFD TSSSHQEACF RENLPGHVRA 180 PAVFKCVRVT SVDDGEDEYA YQAVVNIGGH VFKGFLYDQG VDDGRGELTE TSPMTGGNNN 240 NAVPNISELH LGAGRSGGAS SSSPMLPSDV YGGGAGVMLG GATYGNTIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	9e-63	SRS family protein