PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696582.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 277aa MW: 30776.8 Da PI: 10.1151

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.3	3.1e-16	22	112	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W++ v +L++a+++++e +r+klk+ +W++v++++ r++g ++p qCk+k+e+++kry+ + + + + + s++p+f +++ XP_020696582.1 22 EWSEGAVACLLDAYESKWELRSRAKLKGRDWDDVARRVsgRAGGArsAKTPSQCKNKIESMKKRYRSESAATVAGgRGGGFSRWPFFGRIQ 112 5***********************************9866665336799***********99887776657788889**9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
METKPLFNNP NNPPVAGGRR DEWSEGAVAC LLDAYESKWE LRSRAKLKGR DWDDVARRVS 60 GRAGGARSAK TPSQCKNKIE SMKKRYRSES AATVAGGRGG GFSRWPFFGR IQRLMTWKND 120 SGSGFMLEAS PVAAAAVPIG GTPAMNGGVG AGKEPLEGKG ENKEHSQAQI DAEPSKPTND 180 AYKEREDKEE KKEKKKKKKR RMQEREEEGD DFDVIESIQS LAETALKVEQ LRMEAMRDVE 240 KIWAQAEAKK GELDLKRTEI TAKTQLKIAR LFCKSTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	199	KKEKKKKKK
2	194	200	KKKKKKR
3	194	202	KKKKKKRRM
4	195	201	KKKKKKR
5	195	203	KKKKKKRRM
6	196	201	KKKKRR
7	197	202	KKKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	8e-50	Trihelix family protein