PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696732.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 220aa MW: 24949.8 Da PI: 7.0803

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696732.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.1e-07	65	111	1	45
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 r +WT+eE + + +a ++ + +W +Ia+ ++ ++++++ +++ XP_020696732.1 65 RANWTPEENKAFEKALVDMPDEtpdRWLRIASQIP-SKSPEDIHLHYI 111 568***************99*********.********96 PP
2	Myb_DNA-binding	41.7	2.6e-13	156	200	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++++ +++G g+W+ I+r k+Rt+ q+ s+ qk+ XP_020696732.1 156 PWTEDEHRRFLEGLERFGRGDWRNISRWAVKTRTPTQVASHAQKF 200 8******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MIKVGVPISA PTDEDFALNS RPVRCPCGAP SRHLAISIRH YSSNADMNGS HQHIATGSGN 60 IPTNRANWTP EENKAFEKAL VDMPDETPDR WLRIASQIPS KSPEDIHLHY IALLHDIALI 120 DSGGFDLPEY DEDEDDPIGR SPDQQPAKDG RRKGVPWTED EHRRFLEGLE RFGRGDWRNI 180 SRWAVKTRTP TQVASHAQKF YLRQNVKKES KRKSIHDITS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-47	MYB family protein