PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020696788.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 198aa    MW: 23229.4 Da    PI: 7.4135
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020696788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.8e-193891356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    k++++++eq++ Le  F ++r++  +++e LA +lgL+ +qV vWFqNrRa++k
  XP_020696788.1 38 KKRKLSDEQVKLLEFSFMRERKLECRRKESLAVELGLDPKQVAVWFQNRRARWK 91
                    56799************************************************9 PP
2HD-ZIP_I/II106.61.8e-3438129293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkr+ls+eqvklLE sF +e+kLe +rK++la eLgl+p+qvavWFqnrRAR+k++++E++y +Lk++ ++ + e+++Lekev +L+e+l++
  XP_020696788.1  38 KKRKLSDEQVKLLEFSFMRERKLECRRKESLAVELGLDPKQVAVWFQNRRARWKSRKMEEEYLRLKSENEEAVVEKCQLEKEVLKLKERLSK 129
                     9**************************************************************************************99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MEYSYLMSSG FTDNTPQGGK RLRRWQKKAV VAAAAEAKKR KLSDEQVKLL EFSFMRERKL  60
ECRRKESLAV ELGLDPKQVA VWFQNRRARW KSRKMEEEYL RLKSENEEAV VEKCQLEKEV  120
LKLKERLSKT EEEISRLSIG ISGDQKDVRA LESSSSSLST VNHEVVAEDI NAVDWQEYFI  180
DFMYSNYWIG WGDDFHGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-26HD-ZIP family protein