PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696921.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 578aa MW: 65332.8 Da PI: 6.6314

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39	1.8e-12	106	147	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 + W ++E+ ll+++++++G g+W+ +a+++g ++ +qc++++ XP_020696921.1 106 QDWNADEEILLLEGIEMYGLGNWAEVAEHVG-TKNKEQCINHY 147 57***************************.********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MGRSRGVSNS ADDDVNQRSK RRRVAPAGEN LENASTGQGG TEGKKALYHC NYCNKDISGK 60 IRIKCSKCPD FDLCVECFSV GAEVTPHRSN HPYRVMDNLS FPLICQDWNA DEEILLLEGI 120 EMYGLGNWAE VAEHVGTKNK EQCINHYTAL YMNSPSYPLP DMSRVNGKNR KELLAMAKAQ 180 GEGKKGISVL GDVTPKEESP FSPSRIKVED LSEVHAGRSP SGLTVGASKK VSNVGQLKEV 240 SDVTKVESLI TAEDHVDRSV GVKKPKYSGD EAPSLTELSG FNPRRQEFDL EYDNDAEQSL 300 ADMEFKETDT ETDRELKLRV LHIYLSRLEE RRRRKDFILE RNLLYPHPLE KELANEDREV 360 YHRYKVFMRF LSQEEHDALV SSVIEERRIR RRIQELQECR AAGCRTLAEA KMYAEQKRRK 420 ELEANVQKTK ETSALINNNK VTQKINRPIS RDKIDSDGSP LSMVDNHKIK GLTLDSSGKD 480 SPVTSGQANL RSFDDWDIIG LPGADLLTES EQLLCCQNRL FPSHYLKMQE VLVQEILKGA 540 VVKAVDAHQL FKIDPNKIDK IYDLVTKKLG QSEDLFNA

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MGRSRGVSNS ADDDVNQRSK RRRVAPAGEN LENASTGQGG TEGKKALYHC NYCNKDISGK  60
IRIKCSKCPD FDLCVECFSV GAEVTPHRSN HPYRVMDNLS FPLICQDWNA DEEILLLEGI  120
EMYGLGNWAE VAEHVGTKNK EQCINHYTAL YMNSPSYPLP DMSRVNGKNR KELLAMAKAQ  180
GEGKKGISVL GDVTPKEESP FSPSRIKVED LSEVHAGRSP SGLTVGASKK VSNVGQLKEV  240
SDVTKVESLI TAEDHVDRSV GVKKPKYSGD EAPSLTELSG FNPRRQEFDL EYDNDAEQSL  300
ADMEFKETDT ETDRELKLRV LHIYLSRLEE RRRRKDFILE RNLLYPHPLE KELANEDREV  360
YHRYKVFMRF LSQEEHDALV SSVIEERRIR RRIQELQECR AAGCRTLAEA KMYAEQKRRK  420
ELEANVQKTK ETSALINNNK VTQKINRPIS RDKIDSDGSP LSMVDNHKIK GLTLDSSGKD  480
SPVTSGQANL RSFDDWDIIG LPGADLLTES EQLLCCQNRL FPSHYLKMQE VLVQEILKGA  540
VVKAVDAHQL FKIDPNKIDK IYDLVTKKLG QSEDLFNA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	24	KRRRV
2	331	336	RRRRKD