PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697034.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family RAV
Protein Properties Length: 326aa    MW: 35893.8 Da    PI: 10.1661
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697034.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.85.3e-1355103155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  +++Aa+a++ a+++++g
  XP_020697034.2  55 SQYKGVVPQP-NGRWGAQIYEK-----HRRVWLGTFNLEQDAARAYDLAAQRFRG 103
                     78****9888.8*********3.....5**********99*************98 PP
2B390.51.3e-28171268194
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+ tpsdv+k++rlv+pk++ae+h    +g  ++++ l +e     g++W+++++y+++s++yvltkGW++Fvk++gL +gD v F++++ +e
  XP_020697034.2 171 FDKAVTPSDVGKLNRLVIPKQHAEKHfplsDG--AKGVLLNFEEggAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLVAGDLVGFYRSKGEE 263
                     89************************996533..467777777754556****************************************887777 PP

                     E..EE CS
              B3  90 felvv 94 
                     ++l++
  XP_020697034.2 264 RQLYI 268
                     77766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
METTSCIDSS STTIDLPSPP LQRMSSGVSA VTSPGATTIS SEHSTEAESK KLPSSQYKGV  60
VPQPNGRWGA QIYEKHRRVW LGTFNLEQDA ARAYDLAAQR FRGRDAITNF PPLSLSSDPH  120
QLSFLLSRSK AEVVDMLRKH TYLDELRHSP PLSSPNHPPI LSTKPAREHL FDKAVTPSDV  180
GKLNRLVIPK QHAEKHFPLS DGAKGVLLNF EEGGAGGKVW RFRYSYWNSS QSYVLTKGWS  240
RFVKEKGLVA GDLVGFYRSK GEERQLYIEC KPRSGEGGGV QMLRLFGVNI VKASAAAVVG  300
SLNLNRKRSL EGIEVGLFKK QCVGGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-111RAV family protein