PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697063.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HSF
Protein Properties Length: 253aa    MW: 27934.1 Da    PI: 6.9393
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind76.54.6e-24133191260
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                     Fl+k+y+i++d++l++++ ws  g+sfvv+d+ ef++ vLp++Fkh nf+SFvRQLn+Y
  XP_020697063.1 133 FLSKTYDIVNDPSLDRFVCWSPAGQSFVVWDPVEFSRVVLPRHFKHGNFSSFVRQLNTY 191
                     9*********************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MDPSQTVLPA PVQTLSVPSC SSPSGHSPPS PASRSFDASS VCSTFGLFET LYPSISRTTD  60
CATPSSSSQP MIFRATGASS STKLEPKFQY LPGVSNKSLI CPSPSCKSLP QASVVVDIPR  120
PLESLQSSPI PPFLSKTYDI VNDPSLDRFV CWSPAGQSFV VWDPVEFSRV VLPRHFKHGN  180
FSSFVRQLNT YVGILHCSPN LVFQHFYLDV SLCFICSLTY SVFWFICCIF DDVYCFVSVY  240
LLLFSFLSAF YMV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.18e-32HSF family protein