PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697131.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 206aa MW: 24243.9 Da PI: 8.6507

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.7e-19	85	139	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F ++++++ ++eeLAkklgL rqV vWFqNrRa+ k XP_020697131.1 85 RKKLRLTNEQSTLLERSFCSHKTLTSIQKEELAKKLGLRPRQVEVWFQNRRARTK 139 678899***********************************************98 PP
2	HD-ZIP_I/II	119.9	1.4e-38	85	172	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl++eq++lLE+sF ++++L++ +K+ela++Lgl+prqv+vWFqnrRARtk+kq+E+d+e Lkr++d+l++en+rL++e +eLr XP_020697131.1 85 RKKLRLTNEQSTLLERSFCSHKTLTSIQKEELAKKLGLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCDNLSDENRRLRRELNELR 172 69************************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MGEELCDTQL TLAIKGGGFS ATQHSYRREV TKPPVRLHLC FPPFLKKEED EEREQKTNSM 60 ELKNLQMNKS KNKKEDNEDV HGMIRKKLRL TNEQSTLLER SFCSHKTLTS IQKEELAKKL 120 GLRPRQVEVW FQNRRARTKL KQTEVDCELL KRCCDNLSDE NRRLRRELNE LRFYASKVED 180 MRVCPSCESL MAEEEEKKPG VLQLCI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	4e-32	HD-ZIP family protein