PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697356.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 364aa MW: 39452.9 Da PI: 7.5022

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2.1e-12	179	226	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k Lq XP_020697356.1 179 QEHIMAERKRREKLSQRFIALSAIVPDL-----KKMDKASVLGDAIKYLKTLQ 226 5799**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MINHSITMES QAGEARWLSD IGMADPNYQQ WELSSLDQLI SPNMWDDDLH QTLSSESQSL 60 NPAATITSNT FSSSSSIDSS HAAMAADERS KKMTKTKSWD SFATLQKTIL PPTVSSPSIL 120 SFGRPDSPND SSELYKNLVM ATVEEGKGNS LKRGYQTMAA APGKKKASAA ASRPSSHNQE 180 HIMAERKRRE KLSQRFIALS AIVPDLKKMD KASVLGDAIK YLKTLQEKVK SLEDQAAKTT 240 VKSAILIKKS QLSTTTTNDD TDISSSGEST ADCVGGCCQS LPEIEVKLSD KTVLIKIHCE 300 SKKGILARAL SEIEKLQLCV VGINALPFAA SSLDITVMAK IGEGFSMTAM DLVRNLSSAF 360 SQFM

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MINHSITMES QAGEARWLSD IGMADPNYQQ WELSSLDQLI SPNMWDDDLH QTLSSESQSL  60
NPAATITSNT FSSSSSIDSS HAAMAADERS KKMTKTKSWD SFATLQKTIL PPTVSSPSIL  120
SFGRPDSPND SSELYKNLVM ATVEEGKGNS LKRGYQTMAA APGKKKASAA ASRPSSHNQE  180
HIMAERKRRE KLSQRFIALS AIVPDLKKMD KASVLGDAIK YLKTLQEKVK SLEDQAAKTT  240
VKSAILIKKS QLSTTTTNDD TDISSSGEST ADCVGGCCQS LPEIEVKLSD KTVLIKIHCE  300
SKKGILARAL SEIEKLQLCV VGINALPFAA SSLDITVMAK IGEGFSMTAM DLVRNLSSAF  360
SQFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	190	ERKRRE
2	186	191	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-51	bHLH family protein