PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697407.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 260aa    MW: 29077.1 Da    PI: 8.8937
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.7e-18106160256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Le+ F+++++++ ++++ LAk+l+L  rq+ vWFqNrRa+ k
  XP_020697407.1 106 RKKLRLTKEQSALLEDRFKEHSTLNPKQKQTLAKQLNLRARQIEVWFQNRRARTK 160
                     788899***********************************************98 PP
2HD-ZIP_I/II121.44.6e-39106194190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l++rq++vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+ke +eLr +
  XP_020697407.1 106 RKKLRLTKEQSALLEDRFKEHSTLNPKQKQTLAKQLNLRARQIEVWFQNRRARTKLKQTEVDCEFLRRCCETLTEENRRLQKELQELR-A 194
                     69*************************************************************************************9.4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MEKEDSCDTG LSLGLGLPAN LRRRQPKPPP PPLEPSLTLS LSEEIYGSTT TPKEARLSSP  60
HSTISSFSTT NYIKKEKLDV GGEETEVERG SSLLRSREED DEAAARKKLR LTKEQSALLE  120
DRFKEHSTLN PKQKQTLAKQ LNLRARQIEV WFQNRRARTK LKQTEVDCEF LRRCCETLTE  180
ENRRLQKELQ ELRAIKFSAP PPPLFMQLPA ATLMVCPSCE RIAGAGVGAA NKADGKDISG  240
GSFMKPTQHL FNPFAHSATC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155163RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.17e-68HD-ZIP family protein