PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697466.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 272aa MW: 29829.3 Da PI: 8.0086

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.8	5.5e-42	22	98	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C v+gC adls+++eyh+rhkvCe+hsk+p v+v+g+eqrfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q XP_020697466.1 22 TCSVDGCVADLSKCREYHKRHKVCEAHSKTPIVVVAGREQRFCQQCSRFHSLSEFDEGKRSCRKRLDGHNRRRRKPQ 98 6**************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MVTSSGASRR ARVPSSTGHI ATCSVDGCVA DLSKCREYHK RHKVCEAHSK TPIVVVAGRE 60 QRFCQQCSRF HSLSEFDEGK RSCRKRLDGH NRRRRKPQLD TLNPGNLLSN HQGTGYSSHL 120 QISPSTMPDP NWINFSAKSE HGALHSHCLP LQFPFLQQSE AGLGSDRAFS LLSSSAQSSQ 180 IHLSPMAYSA DKISTEQPLQ QCSSAELYPC FHSPTCASMA GMPCVQTEDE NVGSNLVSEA 240 NGTNLHCQGM FQGSSKVLLE GTSETPPNPW QW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	97	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-45	SBP family protein