PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697469.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-X1

Protein Properties

Length: 1032aa MW: 111876 Da PI: 7.8829

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16.6	1.7e-05	249	268	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C+++CH G C++C++ XP_020697469.1 249 CGRHHCERPCHAGSCDSCQE 268 ******************85 PP
2	zf-NF-X1	19.8	1.8e-06	469	487	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+Cq lCH G CppC XP_020697469.1 469 CGNHSCQLLCHSGHCPPCL 487 ******************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence
MSSSSTNRRL PSAGQRPRAA ATNRQEWVPR SSAPLHHYDQ PQPRPSRRSA TDNTSVPQLV 60 YEIQDKLSRG TVECMICYDM VRRSAPMWSC PACYSIFHLH CVRKWARSPT SAADPTPTSS 120 GDWRCPGCQS PQSIPAGQLS YTCFCGKRHD PPNDLYLTPH SCGEPCGKPL DRASLLPPDG 180 SIKGVADREE DLRCPHVCVL QCHPGPCPPC KAFAPRETCP CGKTEIVRRC SERRVPLSCG 240 QPCNRLLTCG RHHCERPCHA GSCDSCQELI TASCFCGKKT EAVLCGDMAV KGEFNERIGL 300 FSCNLHCGRS LSCGNHLCKE NCHPGPCGEC ELLPAKIKAC HCGKMSLVGE RKSCLDPIPT 360 CSDVCGKPLV CKTHFCKIPC HEGNCPPCSV LVEQRCRCGS SRQTVECHQL FDDKFSFICE 420 RTCGRKKNCG RHRCSERCCP LSKSGDDQIS GGHWDPHFCP VPCGKRLRCG NHSCQLLCHS 480 GHCPPCLETI FTDLSCACGK TTIPPPIPCG TPMPSCPHPC SMPQPCGHPA SHSCHFGDCP 540 PCTIPVLKEC IGGHVMLRNI PCGSKDIRCN QLCGKTRQCG IHACARTCHP PPCDSSAASE 600 LEGKFSCGQV CGAPRRDCKH TCITPCHPSS ACPERRCDFA TTISCSCGRV TATVPCGAGS 660 SSSSFSNDAL FEASVIQKLP ASLQPLDVNG RKVPLGQRKL ACDAECEKAA RKKQLADAFD 720 VTQPNLDSLH FGESSGASEV LSDLMRREPK WVVAIEDRFK FMVLGKSKPG SGSNVKVHVF 780 CHMVKEKRDA VRYIAERWKL SVQAAGWEPK RFVVVHVTPK SKPPARIIGS KSGVPVNSSQ 840 PPAYDPLIDM DPRLVVAMLD LPRDADISAL VLRFGGECEL VWLNDKNALS VFSDPVRAAT 900 ALRRLEHGSP YQGAVTMMQT GGVSAATATG GNAWGGAAQS NSWKMAVAPQ ADSWGPDWSS 960 GADLAIPVWK RNEENPISTT VNRWNMLDFD DAMTESASGR AGSSPADESL VDRGAVDVGV 1020 GHEVDNWEEV CE

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence

MSSSSTNRRL PSAGQRPRAA ATNRQEWVPR SSAPLHHYDQ PQPRPSRRSA TDNTSVPQLV  60
YEIQDKLSRG TVECMICYDM VRRSAPMWSC PACYSIFHLH CVRKWARSPT SAADPTPTSS  120
GDWRCPGCQS PQSIPAGQLS YTCFCGKRHD PPNDLYLTPH SCGEPCGKPL DRASLLPPDG  180
SIKGVADREE DLRCPHVCVL QCHPGPCPPC KAFAPRETCP CGKTEIVRRC SERRVPLSCG  240
QPCNRLLTCG RHHCERPCHA GSCDSCQELI TASCFCGKKT EAVLCGDMAV KGEFNERIGL  300
FSCNLHCGRS LSCGNHLCKE NCHPGPCGEC ELLPAKIKAC HCGKMSLVGE RKSCLDPIPT  360
CSDVCGKPLV CKTHFCKIPC HEGNCPPCSV LVEQRCRCGS SRQTVECHQL FDDKFSFICE  420
RTCGRKKNCG RHRCSERCCP LSKSGDDQIS GGHWDPHFCP VPCGKRLRCG NHSCQLLCHS  480
GHCPPCLETI FTDLSCACGK TTIPPPIPCG TPMPSCPHPC SMPQPCGHPA SHSCHFGDCP  540
PCTIPVLKEC IGGHVMLRNI PCGSKDIRCN QLCGKTRQCG IHACARTCHP PPCDSSAASE  600
LEGKFSCGQV CGAPRRDCKH TCITPCHPSS ACPERRCDFA TTISCSCGRV TATVPCGAGS  660
SSSSFSNDAL FEASVIQKLP ASLQPLDVNG RKVPLGQRKL ACDAECEKAA RKKQLADAFD  720
VTQPNLDSLH FGESSGASEV LSDLMRREPK WVVAIEDRFK FMVLGKSKPG SGSNVKVHVF  780
CHMVKEKRDA VRYIAERWKL SVQAAGWEPK RFVVVHVTPK SKPPARIIGS KSGVPVNSSQ  840
PPAYDPLIDM DPRLVVAMLD LPRDADISAL VLRFGGECEL VWLNDKNALS VFSDPVRAAT  900
ALRRLEHGSP YQGAVTMMQT GGVSAATATG GNAWGGAAQS NSWKMAVAPQ ADSWGPDWSS  960
GADLAIPVWK RNEENPISTT VNRWNMLDFD DAMTESASGR AGSSPADESL VDRGAVDVGV  1020
GHEVDNWEEV CE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein