PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697513.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 294aa    MW: 33416.6 Da    PI: 6.349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697513.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09207249855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  XP_020697513.2 207 AAKIRRERISERLKILQDLVPNG-----TKVDLVTMLEKAISYVKFLQ 249
                     6699*****************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MALANMHGLD LSYLEHLAFK SKHDFMLEEE GCTKNYPSVL PALSDQSNMR DNSSLMFLET  60
ISSSQEAQTV FNIKVGADHW MQSNSSVLSF EQKFGFGENC INWVEPMDYD YQMNHHHTLK  120
SASDSCELET PDYALMDSQL GQNRFKIFYS TTNSGDDLED ISWQQQSLQK RQFLGGDMQA  180
SKKHCGNNKK QTKAKITTTS KDPQSIAAKI RRERISERLK ILQDLVPNGT KVDLVTMLEK  240
AISYVKFLQL QVKVLATDEF WPAQGGKAPE VSHVKEAIDA ILSSHRERNS NFNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.17e-58bHLH family protein