PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697655.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 320aa    MW: 35293.7 Da    PI: 10.7129
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697655.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.22.5e-1478161186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Li+a  e+  +l+rg+l++++W+ev++++ ++  ++++pk   qCk++++ l+k+yk ++   +       s++p+f++l+
  XP_020697655.1  78 CWSEGATSVLIDAWGERYIELSRGNLRQKQWQEVADVVsSRDDYSKTPKtdaQCKNRIDTLKKKYKVERSKIGT------SSWPFFHRLD 161
                     7*************************************866677777754449*************99888875......57******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MDDEYDVSSR SPSPSSSSPL PLPLPISIAR PSSTPPTNSQ PSNPVTVASS SPHQILTLAL  60
PIQPPLGSAG GGGGRDDCWS EGATSVLIDA WGERYIELSR GNLRQKQWQE VADVVSSRDD  120
YSKTPKTDAQ CKNRIDTLKK KYKVERSKIG TSSWPFFHRL DLLLGPTLKP SPSPATIPKK  180
QRTNLSAKRK VSTPAASPSS TSDSLPPAAN GGRKALPAEK MRELTRAILR FAEVYQRVES  240
SKLQQSMEME RQRMEFSREL EEQRMHFFMK TQIELSQLKR HRRPSSGSGG GGNNHRRRHG  300
HQTPANRNND GNQSFGGGLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.15e-48Trihelix family protein