PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697704.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 631aa MW: 72368.5 Da PI: 8.6024

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	36.1	8.7e-12	1	24	12	35
GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35 +Rrgp+g++tLCnaCGl +rkk l XP_020697704.1 1 MRRGPEGPRTLCNACGLAWRKKTL 24 5********************976 PP
2	FAR1	87.6	1.8e-27	58	144	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA ++GFsvrk k+ ++++ +rt+vCs+eg+r+e+k ++++r+r+etr+gC a++k+k++ +g++++tk+ eHnH+ XP_020697704.1 58 EFYNNYAGMAGFSVRKGWLDKRVSDKTTRSRTLVCSREGFRQERKAG-NEAKRPRPETRIGCLARMKIKLMPSGRYRITKFIAEHNHQ 144 6*****************************************999.9************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MRRGPEGPRT LCNACGLAWR KKTLKKVTYL DASGEDAFGA DMVPKLGMEF ENENKAYEFY 60 NNYAGMAGFS VRKGWLDKRV SDKTTRSRTL VCSREGFRQE RKAGNEAKRP RPETRIGCLA 120 RMKIKLMPSG RYRITKFIAE HNHQPAPPSS KHLLRSQRVT SEFQSTDADL SDDAVAALRS 180 SGEPTITRPD VYILPSDYNA CLRSKRMKSM QSGDAEALLK YLQSMQLQNT AFFYAIQLDE 240 DDKLTNIFWA DSKSLEDFNY FGDVVCLDTT YKFNGHCRPF VLFLGVNHHK QITLFGAAFL 300 YDETVESFKW LLNTFGIAMH GKLPKTILTD ESVAISSALA TVWPETMHRL CVWQIYHSSM 360 KHLSHVFQSS KTFAKDFSRC IYSSEDEDQL VLGWRSLLEK YDLRSNEWIS KLFECRENWA 420 LAYGRQTFCA DIKSTLQNES LSSELKKYLT PQHDLPSFFK NYEKVVSECR YAELQADFHA 480 SQSFPRIPPS KMLRQAASMY TPAVFEMFRK EFDVFMDCML YNSGEYGRVT EYRITVGDNA 540 KEYYVRLDST DFSVACSCKK FEFTGIHCGH VIKVLDVRNI KELPFRYYLK RWKRDAKLAI 600 DAEPKSPTVS LASGQVPPDP HQGCQLGQAT G

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MRRGPEGPRT LCNACGLAWR KKTLKKVTYL DASGEDAFGA DMVPKLGMEF ENENKAYEFY  60
NNYAGMAGFS VRKGWLDKRV SDKTTRSRTL VCSREGFRQE RKAGNEAKRP RPETRIGCLA  120
RMKIKLMPSG RYRITKFIAE HNHQPAPPSS KHLLRSQRVT SEFQSTDADL SDDAVAALRS  180
SGEPTITRPD VYILPSDYNA CLRSKRMKSM QSGDAEALLK YLQSMQLQNT AFFYAIQLDE  240
DDKLTNIFWA DSKSLEDFNY FGDVVCLDTT YKFNGHCRPF VLFLGVNHHK QITLFGAAFL  300
YDETVESFKW LLNTFGIAMH GKLPKTILTD ESVAISSALA TVWPETMHRL CVWQIYHSSM  360
KHLSHVFQSS KTFAKDFSRC IYSSEDEDQL VLGWRSLLEK YDLRSNEWIS KLFECRENWA  420
LAYGRQTFCA DIKSTLQNES LSSELKKYLT PQHDLPSFFK NYEKVVSECR YAELQADFHA  480
SQSFPRIPPS KMLRQAASMY TPAVFEMFRK EFDVFMDCML YNSGEYGRVT EYRITVGDNA  540
KEYYVRLDST DFSVACSCKK FEFTGIHCGH VIKVLDVRNI KELPFRYYLK RWKRDAKLAI  600
DAEPKSPTVS LASGQVPPDP HQGCQLGQAT G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	112	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-122	FAR1 family protein