PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697705.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 377aa MW: 41377 Da PI: 6.1335

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.1	5.3e-14	191	250	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse..ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ k++g+++A+++d ++ g ++ k+++lg++ ++e+Aa+a++ a +k++g XP_020697705.1 191 SCYHGVTRLKWSGKYEAHLWDNTSrvEGsrRKgKHVYLGSYESEEKAARAHDLAVLKYWG 250 79*****************655586686336***********************98 PP
2	AP2	53.1	7.8e-17	296	348	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++k +g+W A+I + g r k ++lg+fgt+eeAa+a++ a+ +l+g XP_020697705.1 296 AYRGVTRRK-DGKWQARIGRV---GeSRdvKDIYLGTFGTEEEAAEAYDIAAIELRG 348 69**999.9***998...553458***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MSESRNWPDA PEVGYTYKNQ MPILRSSDNQ GEGLEVMNFG AQETYPPQSA TSGPAAGENY 60 GFLEAVSVGS DAQSPQAHGN GPSLSATEQR VNFPRKSRKD TPLPRAAEMI ADAAQEVSLS 120 EVAGKEGLEG SLGWHQEVSI SESSGPRNAT SEVAGNGSME ILPIVPANCG EKRVGSVLAV 180 AMRKYAVPKS SCYHGVTRLK WSGKYEAHLW DNTSRVEGSR RKGKHVYLGS YESEEKAARA 240 HDLAVLKYWG PSQTTKLNFP VSEYEDELEI MKTMTQDEYV AHVKRKSSCF SRGASAYRGV 300 TRRKDGKWQA RIGRVGESRD VKDIYLGTFG TEEEAAEAYD IAAIELRGVH AVTNFDISNY 360 CEGSFKRIEE PPCKLET

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MSESRNWPDA PEVGYTYKNQ MPILRSSDNQ GEGLEVMNFG AQETYPPQSA TSGPAAGENY  60
GFLEAVSVGS DAQSPQAHGN GPSLSATEQR VNFPRKSRKD TPLPRAAEMI ADAAQEVSLS  120
EVAGKEGLEG SLGWHQEVSI SESSGPRNAT SEVAGNGSME ILPIVPANCG EKRVGSVLAV  180
AMRKYAVPKS SCYHGVTRLK WSGKYEAHLW DNTSRVEGSR RKGKHVYLGS YESEEKAARA  240
HDLAVLKYWG PSQTTKLNFP VSEYEDELEI MKTMTQDEYV AHVKRKSSCF SRGASAYRGV  300
TRRKDGKWQA RIGRVGESRD VKDIYLGTFG TEEEAAEAYD IAAIELRGVH AVTNFDISNY  360
CEGSFKRIEE PPCKLET

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-64	AP2 family protein