PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697724.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 357aa MW: 40081.2 Da PI: 7.478

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.7e-17	96	141	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W +eEd +l+ +v +G+ +W++Ia+++ gR++k+c++rw++ XP_020697724.1 96 RGHWRPEEDSKLKALVSIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 141 899***************************.*********996 PP
2	Myb_DNA-binding	57.7	2.7e-18	148	191	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++++k++w+ XP_020697724.1 148 RSAFTEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHV 191 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MAPQHFSSTD NGMANRYIEA KAQEEANSPS PSSSKSFFSQ MVSVPNNPSC SLSTHKFFPF 60 MGNSDTNEVL AENHNRADAE EENLNESTGQ SSLCARGHWR PEEDSKLKAL VSIYGPQNWN 120 LIAEKLEGRS GKSCRLRWFN QLDPTINRSA FTEEEEEKLM AAHRLYGNKW AMIARLFPGR 180 TDNSVKNHWH VIMARKYREQ SNAYRRRKLS QAIDRRVEEI TPNHPFSFSS SIVDYSSFSP 240 HLLPNGGKNS FSAHFGSHTK EKPLDFLSGQ SPRNGDKTKK FITRTWEGQS DHNEALHSFY 300 CHQESNLFAM TASSSSGEGG ENTGQVNRKE EEGRGHMVAS MASSPTFIDF LGVGATT

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MAPQHFSSTD NGMANRYIEA KAQEEANSPS PSSSKSFFSQ MVSVPNNPSC SLSTHKFFPF  60
MGNSDTNEVL AENHNRADAE EENLNESTGQ SSLCARGHWR PEEDSKLKAL VSIYGPQNWN  120
LIAEKLEGRS GKSCRLRWFN QLDPTINRSA FTEEEEEKLM AAHRLYGNKW AMIARLFPGR  180
TDNSVKNHWH VIMARKYREQ SNAYRRRKLS QAIDRRVEEI TPNHPFSFSS SIVDYSSFSP  240
HLLPNGGKNS FSAHFGSHTK EKPLDFLSGQ SPRNGDKTKK FITRTWEGQS DHNEALHSFY  300
CHQESNLFAM TASSSSGEGG ENTGQVNRKE EEGRGHMVAS MASSPTFIDF LGVGATT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	1e-73	MYB family protein