PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697821.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 572aa MW: 63514.6 Da PI: 7.0772

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697821.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.7e-13	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW eE+ +++ a ++G + W +I +++g ++t q++s+ qk+ XP_020697821.1 24 RERWNDEEHNKFLAALGLYGRE-WQRIQEHVG-TKTTVQIRSHAQKF 68 78****************99.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
METTPSKDPA KVQARKPYTI SKQRERWNDE EHNKFLAALG LYGREWQRIQ EHVGTKTTVQ 60 IRSHAQKFFL KLQKGIGVMC LGHPHGIEIP PPRHKRKASH PSDEEKVNNC SISLAWPSTD 120 KVAMDAKKPM EHATVESMNQ AFGKCNSSAS VYCGNNNAYS FSEPLPMTDE SVKMTGKFLH 180 LFEMNGNFTN PQMNFTPAEE RYEILKKMDE PFTSPKHTLQ GEERYQNIVS PQINGAKCSG 240 EGISASFIEH RDEDVDLNLF LNPTRSVKCM SKDPAISSTH QAVPSTSFYD ENASTALSCL 300 TTNSFPKSHA EASIAASLLA HPVVDSSMIS DTNIDVGGAQ EKHGNITPSI SAIIAATVEA 360 AAAWWRFNGL LPSPFQSSIS SATQTMMQNL TKASKDLEGY SDTKGNTKLQ SCTTLLEPSL 420 SPKTVQELRV ERTEKLPNQY VLSSIVKGIN EVNQVPRKKK DDLSSCDSNT SPFTEAVNIR 480 QLRNAGRLNK PYNARPKQGP LAFEALFSQK VLPQSFGAPH MDYDKSDLNL KKEAALGLQI 540 DLNRKIFTEN DCNSAEEEEA SSLILRPEER ME

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

METTPSKDPA KVQARKPYTI SKQRERWNDE EHNKFLAALG LYGREWQRIQ EHVGTKTTVQ  60
IRSHAQKFFL KLQKGIGVMC LGHPHGIEIP PPRHKRKASH PSDEEKVNNC SISLAWPSTD  120
KVAMDAKKPM EHATVESMNQ AFGKCNSSAS VYCGNNNAYS FSEPLPMTDE SVKMTGKFLH  180
LFEMNGNFTN PQMNFTPAEE RYEILKKMDE PFTSPKHTLQ GEERYQNIVS PQINGAKCSG  240
EGISASFIEH RDEDVDLNLF LNPTRSVKCM SKDPAISSTH QAVPSTSFYD ENASTALSCL  300
TTNSFPKSHA EASIAASLLA HPVVDSSMIS DTNIDVGGAQ EKHGNITPSI SAIIAATVEA  360
AAAWWRFNGL LPSPFQSSIS SATQTMMQNL TKASKDLEGY SDTKGNTKLQ SCTTLLEPSL  420
SPKTVQELRV ERTEKLPNQY VLSSIVKGIN EVNQVPRKKK DDLSSCDSNT SPFTEAVNIR  480
QLRNAGRLNK PYNARPKQGP LAFEALFSQK VLPQSFGAPH MDYDKSDLNL KKEAALGLQI  540
DLNRKIFTEN DCNSAEEEEA SSLILRPEER ME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	4e-30	MYB_related family protein