PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697822.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 570aa MW: 63287.3 Da PI: 7.0772

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697822.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.7e-13	22	66	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW eE+ +++ a ++G + W +I +++g ++t q++s+ qk+ XP_020697822.1 22 RERWNDEEHNKFLAALGLYGRE-WQRIQEHVG-TKTTVQIRSHAQKF 66 78****************99.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
METTPSKDPA KARKPYTISK QRERWNDEEH NKFLAALGLY GREWQRIQEH VGTKTTVQIR 60 SHAQKFFLKL QKGIGVMCLG HPHGIEIPPP RHKRKASHPS DEEKVNNCSI SLAWPSTDKV 120 AMDAKKPMEH ATVESMNQAF GKCNSSASVY CGNNNAYSFS EPLPMTDESV KMTGKFLHLF 180 EMNGNFTNPQ MNFTPAEERY EILKKMDEPF TSPKHTLQGE ERYQNIVSPQ INGAKCSGEG 240 ISASFIEHRD EDVDLNLFLN PTRSVKCMSK DPAISSTHQA VPSTSFYDEN ASTALSCLTT 300 NSFPKSHAEA SIAASLLAHP VVDSSMISDT NIDVGGAQEK HGNITPSISA IIAATVEAAA 360 AWWRFNGLLP SPFQSSISSA TQTMMQNLTK ASKDLEGYSD TKGNTKLQSC TTLLEPSLSP 420 KTVQELRVER TEKLPNQYVL SSIVKGINEV NQVPRKKKDD LSSCDSNTSP FTEAVNIRQL 480 RNAGRLNKPY NARPKQGPLA FEALFSQKVL PQSFGAPHMD YDKSDLNLKK EAALGLQIDL 540 NRKIFTENDC NSAEEEEASS LILRPEERME

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

METTPSKDPA KARKPYTISK QRERWNDEEH NKFLAALGLY GREWQRIQEH VGTKTTVQIR  60
SHAQKFFLKL QKGIGVMCLG HPHGIEIPPP RHKRKASHPS DEEKVNNCSI SLAWPSTDKV  120
AMDAKKPMEH ATVESMNQAF GKCNSSASVY CGNNNAYSFS EPLPMTDESV KMTGKFLHLF  180
EMNGNFTNPQ MNFTPAEERY EILKKMDEPF TSPKHTLQGE ERYQNIVSPQ INGAKCSGEG  240
ISASFIEHRD EDVDLNLFLN PTRSVKCMSK DPAISSTHQA VPSTSFYDEN ASTALSCLTT  300
NSFPKSHAEA SIAASLLAHP VVDSSMISDT NIDVGGAQEK HGNITPSISA IIAATVEAAA  360
AWWRFNGLLP SPFQSSISSA TQTMMQNLTK ASKDLEGYSD TKGNTKLQSC TTLLEPSLSP  420
KTVQELRVER TEKLPNQYVL SSIVKGINEV NQVPRKKKDD LSSCDSNTSP FTEAVNIRQL  480
RNAGRLNKPY NARPKQGPLA FEALFSQKVL PQSFGAPHMD YDKSDLNLKK EAALGLQIDL  540
NRKIFTENDC NSAEEEEASS LILRPEERME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	2e-30	MYB_related family protein