PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697908.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 261aa    MW: 30004.7 Da    PI: 7.9738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT  Ed ll ++++ +G g+W++ ++  g+ R++k+c++rw +yl
   XP_020697908.1 14 RGPWTSREDALLTNYIQNHGEGNWRSLPKLAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding513.4e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+  +eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_020697908.1  67 RGNIGPEEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                      677889****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MGRSPCCSKV GIHRGPWTSR EDALLTNYIQ NHGEGNWRSL PKLAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI GPEEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKKLKKQG  120
LVIREATPRP KQSKSSSNSQ KQGVHISNQT EMIRGNNENK IYAPKPTRLT ARVHVMENSS  180
EEEKGSSDEM ELSANNYWSD GGEYGFLDTD NQFNFDLGLD QFLPVQEDSV MLERLYDEYS  240
QLLQSEVNDI NLFSYDQSLM V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-64MYB family protein