PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697965.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 526aa MW: 58927.6 Da PI: 8.5468

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.8	2.5e-08	412	460	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lv++v ++G g+W+ I + +Rt ++k++w+++l XP_020697965.1 412 AWTLGEVLKLVEGVSRYGAGRWSQIRQVAFasgSHRTSVDLKDKWRNLL 460 7**********************99998999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MGALVDEDGV GRRSTENGEP DGIVASNPVV YQLVRVDGDG RLIPATDDEL IEVKHFVEED 60 GTRQSENEVD TKKVMFKMDV DGPSFGQPNI SDTLAKNQST EACSEIRKNA VNEAAEGSFS 120 KKFSSLKPDF SLLEGEICLD NFSIRELQEA FRATFGRYTS VKDKLWLKRR IAMGLTNSCN 180 IPSANFIIKD NKIVLCNVQE ETTSRTQRNM SYPGYIMMNN STDPLNETLQ RTLNDTSSGI 240 VEQKASFTKA LDKSLEKCNV ENLNTQMEQC GAKRIRRPTK RYIEEHTEVE VMAYSGRVAS 300 LGKTAMHDQH CLKSKVRTPC LVDTSQDLLG GYDARIPSVL RVRRRPPRKN FLTLVNFVHT 360 EREKMNPEVL NSEQSPHQKH EKFISSVGAA FHEKSDTVHP VEASVKRKHH RAWTLGEVLK 420 LVEGVSRYGA GRWSQIRQVA FASGSHRTSV DLKDKWRNLL KASFAQVPTD KGIGNSRKPA 480 SLPIPTPILL RVRELADKRS DSEIEFGSSQ FVGHGGIVQE KETGFL

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MGALVDEDGV GRRSTENGEP DGIVASNPVV YQLVRVDGDG RLIPATDDEL IEVKHFVEED  60
GTRQSENEVD TKKVMFKMDV DGPSFGQPNI SDTLAKNQST EACSEIRKNA VNEAAEGSFS  120
KKFSSLKPDF SLLEGEICLD NFSIRELQEA FRATFGRYTS VKDKLWLKRR IAMGLTNSCN  180
IPSANFIIKD NKIVLCNVQE ETTSRTQRNM SYPGYIMMNN STDPLNETLQ RTLNDTSSGI  240
VEQKASFTKA LDKSLEKCNV ENLNTQMEQC GAKRIRRPTK RYIEEHTEVE VMAYSGRVAS  300
LGKTAMHDQH CLKSKVRTPC LVDTSQDLLG GYDARIPSVL RVRRRPPRKN FLTLVNFVHT  360
EREKMNPEVL NSEQSPHQKH EKFISSVGAA FHEKSDTVHP VEASVKRKHH RAWTLGEVLK  420
LVEGVSRYGA GRWSQIRQVA FASGSHRTSV DLKDKWRNLL KASFAQVPTD KGIGNSRKPA  480
SLPIPTPILL RVRELADKRS DSEIEFGSSQ FVGHGGIVQE KETGFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.1	1e-60	MYB_related family protein