PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698024.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HSF
Protein Properties Length: 279aa    MW: 32440.4 Da    PI: 6.3894
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-35251162102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d+++++++sw e+ ++f+v+ + ef++++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll++
  XP_020698024.1  25 FLTKTFQLVDDPSTDHIVSWGEDASTFIVWRPPEFSRDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGEKHLLSE 110
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k+
  XP_020698024.1 111 IHRRKT 116
                     ****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MAFLVDRCGE MIVSAESHKS APAPFLTKTF QLVDDPSTDH IVSWGEDAST FIVWRPPEFS  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVA DRWEFANEFF RKGEKHLLSE IHRRKTPQIP  120
QQYHHHQQYI NSPTTFHCQE EMSSWIEPPL PQPDNESNPF ISALSEDNER LRRNNSYLLS  180
ELTHMKKLYN DIIYFVQNHV SPMPTDQRLG SQKPCRLIEI DPCDQQETSE SELHLCENYG  240
SIEGGSLKQN EDFNGTVKLF GVPLHGKKRL HSETVGCKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-82HSF family protein