PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698047.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YC
Protein Properties Length: 162aa    MW: 17562.8 Da    PI: 9.9776
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC33.68.3e-11601451999
           NF-YC  19 helPlarikkilkadedvk.....misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                      ++P++r+ ++++ +  v      + +a+a  ++ ka e+f+  lt  ++  a++ +++ +  s ++++v++++ ++fl d  p++
  XP_020698047.1  60 CSFPMSRVWRLVRGECGVAaaaeiRTTADAVFIINKASEMFLKRLTEDAYTFAKSENKKYISYSHLSSTVNQAKRYEFLSDFAPEK 145
                     579********9999888622222357999***************************************************99975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MKKSASSPKE RKRKEAEGSG GMDDAETPTK KKKSSKSLDS GGSSSSSPPA TALASDGAFC  60
SFPMSRVWRL VRGECGVAAA AEIRTTADAV FIINKASEMF LKRLTEDAYT FAKSENKKYI  120
SYSHLSSTVN QAKRYEFLSD FAPEKIRAED ALKSRSLIEA GT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11133RKRKEAEGSGGMDDAETPTKKKK
21234RKRKEAEGSGGMDDAETPTKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-23NF-YC family protein