PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698077.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 412aa MW: 44144.6 Da PI: 9.0477

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00026	172	194	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+++ H XP_020698077.1 172 ACSQCGEVFNKIESLELHQSLrH 194 6******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MALTSFLSSA DAGHHRRKQK KKQQRPPPPP PPPSSLTLSW DHFRNLLNCK STSGPTKVHD 60 PSSAAAAGKQ QRLGLRFGSS GCALGDVVHG SVRVVHRSDT DQYNSSGGDS RHRSSSYVAG 120 DTGPQNRRRR QHAAAPARGG VQLMRLSGCY ECRAVDAEPA CRRCPRSRTL CACSQCGEVF 180 NKIESLELHQ SLRHAVSELG PEDSGRHIVE IIFKSSWQKN HRTICKIDRI LKVHNTPRTI 240 ARFEDYRAAV KSLATAAAAS RRNPRCAADG NELLRFHSVS ISCHLGAVGS TALCFSTGGG 300 GGGTCCVCDV IRHGFRRPSH PFGVRTTASS GLADDDFDSG CGGGNGTRAM LVCRVIAGRV 360 WFTGDGDEGG GGCGGLGGYD SVAEEGTNLE ELFVANPRAI LPCFVVIYRV HD

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MALTSFLSSA DAGHHRRKQK KKQQRPPPPP PPPSSLTLSW DHFRNLLNCK STSGPTKVHD  60
PSSAAAAGKQ QRLGLRFGSS GCALGDVVHG SVRVVHRSDT DQYNSSGGDS RHRSSSYVAG  120
DTGPQNRRRR QHAAAPARGG VQLMRLSGCY ECRAVDAEPA CRRCPRSRTL CACSQCGEVF  180
NKIESLELHQ SLRHAVSELG PEDSGRHIVE IIFKSSWQKN HRTICKIDRI LKVHNTPRTI  240
ARFEDYRAAV KSLATAAAAS RRNPRCAADG NELLRFHSVS ISCHLGAVGS TALCFSTGGG  300
GGGTCCVCDV IRHGFRRPSH PFGVRTTASS GLADDDFDSG CGGGNGTRAM LVCRVIAGRV  360
WFTGDGDEGG GGCGGLGGYD SVAEEGTNLE ELFVANPRAI LPCFVVIYRV HD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-78	C2H2 family protein